Selected Publications
Original Articles
Fukushima T, Togasaki K, Hamamoto J, Emoto K, Ebisudani T, Mitsuishi A, Sugihara K, Shinozaki T, Okada M, Saito A, Takaoka H, Ito F, Shigematsu L, Ohta Y, Takahashi S, Matano M, Kurebayashi Y, Ohgino K, Sato T, Kawada I, Asakura K, Hishida T, Asamura H, Ikemura S, Terai H, Soejima K, Oda M, Fujii M, Fukunaga K, Yasuda H*, Sato T*.
An organoid library unveils subtype-specific IGF-1 dependency via a YAP-AP1 axis in human small cell lung cancer.
Nature Cancer. 2025 in press.
PMID: 40307487
Igarashi R, Oda M, Okada R, Yano T, Takahashi S, Pastuhov S, Matano M, Masuda N, Togasaki K, Ohta Y, Sato S, Hishiki T, Suematsu M, Itoh M, Fujii M, Sato T*.
Generation of human adult hepatocyte organoids with metabolic functions.
Nature. 2025; 641: 1248–1257
PMID: 40240606
View the press release
※PhD Dissertation
Tamagawa H, Fujii M*, Togasaki K, Seino T, Kawasaki S, Takano A, Toshimitsu K, Takahashi S, Ohta Y, Matano M, Kawasaki K, Machida Y, Sekine S, Machinaga A, Sasai K, Kodama Y, Kakiuchi N, Ogawa S, Hirano T, Seno H, Kitago M, Kitagawa Y, Iwasaki E, Kanai T, Sato T*.
Wnt-deficient and hypoxic environment orchestrates squamous reprogramming of human pancreatic ductal adenocarcinoma.
Nature Cell Biol. 2024;26:1759-1772.
PMID: 39232216
View the press release
※PhD Dissertation
Sugimoto S, Kobayashi E*, Fujii M, Ohta Y, Arai K, Matano M, Ishikawa K, Miyamoto K, Toshimitsu K, Tkahashi S, Nanki K, Hakamata Y, Kanai T, Sato T*.
An organoid-based organ repurposing approach to treat short bowel syndrome.
Nature. 2021:99-104.
PMID: 33627870
View the press release
Ohta Y, Fujii M, Takahashi S, Takano A, Nanki K, Matano M, Hanyu H, Saito M, Shimokawa M, Nishikori S, Hatano Y, Ishii R, Sawada K, Machinaga A, Ikeda W, Imamura T, Sato T*
Cell-matrix interface regulates dormancy in human colon cancer stem cells.
Nature. 2022; 608:784-794.
PMID: 35798028
View the press release
※PhD Dissertation
Nanki K, Fujii M,Shimokawa M, Matano M, Nishikori S, Date S, Takano A, Toshimitsu K, Ohta Y, Takahashi S, Sugimoto S, Ishimaru K, Kawasaki K, Nagai Y, Ishii R, Yoshida K, Sasaki N, Hibi T, Ishihara S, Kanai T, Sato T*.
Somatic inflammatory gene mutations in human ulcerative colitis epithelium.
Nature. 2020;577:254-259.
PMID: 31853059
View the press release
Kawasaki K, Toshimitsu K, Matano M, Fujita M, Fujii M, Togasaki K, Ebisudani T, Shimokawa M, Takano A, Takahashi S, Ohta Y, Nanki K, Igarashi R, Ishimaru K, Ishida H, Sukawa Y, Sugimoto S, Saito Y, Maejima K, Sasagawa S, Lee H, Kim HG, Ha K, Hamamoto J, Fukunaga K, Maekawa A, Tanabe M, Ishihara S, Hamamoto Y, Yasuda H, Sekine S, Kudo A, Kitagawa Y, Kanai T, Nakagawa H, Sato T*.
An Organoid Biobank of Neuroendocrine Neoplasms Enables Genotype-Phenotype Mapping.
Cell. 2020;183 :1420-1435.
PMID: 33159857
View the press release
Nakamoto N, Sasaki N, Aoki R, Miyamoto K, Suda W, Teratani T, Suzuki T, Koda Y, Chu PS, Taniki N, Yamaguchi A, Kanamori M, Kamada N, Hattori M, Ashida H, Sakamoto M, Atarashi K, Narushima S, Yoshimura A, Honda K, Sato T*, Kanai T*
Gut pathobionts underlie intestinal barrier dysfunction and liver T helper 17 cell immune response in primary sclerosing cholangitis.
Nature Microbiol. 2019:3:492-503.
PMID: 30643240
View the press release
Fujii M, Matano M, Toshimitsu K, Takano A, Mikami Y, Nishikori S, Sugimoto S, Sato T*.
Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition.
Cell Stem Cell. 2018 ;23:787-793.
PMID: 30526881
View the press release
Nanki K, Toshimitsu K, Takano A, Fujii M, Shimokawa M, Ohta Y, Matano M, Seino T, Nishikori S, Ishikawa K, Kawasaki K, Togasaki K, Takahashi S, Sukawa Y, Ishida H, Sugimoto S, Kawakubo H, Kim J, Kitagawa Y, Sekine S, Koo BK, Kanai T, Sato T*.
Divergent Routes toward Wnt and R-spondin Niche Independency during Human Gastric Carcinogenesis.
Cell. 2018;174:856-869.
PMID: 30096312
View the press release
※博士学位論文
Seino T, Kawasaki S, Shimokawa M, Tamagawa H, Toshimitsu K, Fujii M, Ohta Y, Matano M, Nanki K, Kawasaki K, Takahashi S, Sugimoto S, Iwasaki E, Takagi J, Itoi T, Kitago M, Kitagawa Y, Kanai T, Sato T*.
Human Pancreatic Tumor Organoids Reveal Loss of Stem Cell Niche Factor Dependence during Disease Progression.
Cell Stem Cell. 2018 ;22:454-467.
PMID: 29337182
View the press release
※PhD Dissertation
Sugimoto S, Ohta Y, Fujii M, Matano M, Shimokawa M, Nanki K, Date S, Nishikori S, Nakazato Y, Nakamura N, Kanai T, Sato T*.
Reconstruction of the human colon epithelium in vivo.
Cell Stem Cell. 2018;22:454-467
PMID: 29290616
View the press release
※博士学位論文
Shimokawa M, Ohta Y, Nishikori S, Matano M, Takano A, Fujii M, Date S, Sugimoto S, Kanai T, Sato T*.
Visualization and targeting of LGR5+ human colon cancer stem cells.
Nature 2017;545:187-192.
PMID: 28355176
View the press release
※博士学位論文
Matano M, Date S, Shimokawa M, Takano A, Fujii M, Ohta Y, Watanabe T, Kanai T, Sato T*
Modeling colorectal cancer using CRISPR-Cas9-mediated engineering of human intestinal organoids.
Nature Medicine. 2015;21:256-62.
PMID: 25706875
Review Articles
Sato T*, Clevers H*. Growing Self-organizing Mini-guts from a Single Intestinal Stem Cell: Mechanism and Applications.
Science. 2013; 340: 1190-4
PMID: 23744940
Date S, Sato T* Mini-Gut Organoids: Reconstitution of the Stem Cell Niche.
Annu Rev Cell Dev Biol. 2015;31:269-89.
PMID: 26436704
Fujii M*, Sato T*. Somatic cell-derived organoids as prototypes of human epithelial tissues and diseases.
Nature Materials. 2021:156-169
PMID: 32807924
Fujii M*, Sekine S, Sato T*. Decoding the basis of histological variation in human cancer.
Nature Rev Cancer. 2024;24:141-158.
PMID: 38135758
Publications by Year
Selected Publications
2025
Fukushima T, Togasaki K, Hamamoto J, Emoto K, Ebisudani T, Mitsuishi A, Sugihara K, Shinozaki T, Okada M, Saito A, Takaoka H, Ito F, Shigematsu L, Ohta Y, Takahashi S, Matano M, Kurebayashi Y, Ohgino K, Sato T, Kawada I, Asakura K, Hishida T, Asamura H, Ikemura S, Terai H, Soejima K, Oda M, Fujii M, Fukunaga K, Yasuda H*, Sato T*.
An organoid library unveils subtype-specific IGF-1 dependency via a YAP-AP1 axis in human small cell lung cancer.
Nature Cancer. 2025 in press.
PMID: 40307487
Igarashi R, Oda M, Okada R, Yano T, Takahashi S, Pastuhov S, Matano M, Masuda N, Togasaki K, Ohta Y, Sato S, Hishiki T, Suematsu M, Itoh M, Fujii M, Sato T*.
Generation of human adult hepatocyte organoids with metabolic functions.
Nature. 2025; 641: 1248–1257
PMID: 40240606
View the press release
※PhD Dissertation
2024
Tamagawa H, Fujii M*, Togasaki K, Seino T, Kawasaki S, Takano A, Toshimitsu K, Takahashi S, Ohta Y, Matano M, Kawasaki K, Machida Y, Sekine S, Machinaga A, Sasai K, Kodama Y, Kakiuchi N, Ogawa S, Hirano T, Seno H, Kitago M, Kitagawa Y, Iwasaki E, Kanai T, Sato T*.
Wnt-deficient and hypoxic environment orchestrates squamous reprogramming of human pancreatic ductal adenocarcinoma.
Nature Cell Biol. 2024;26:1759-1772.
PMID: 39232216
View the press release
※PhD Dissertation
Fujii M*, Sekine S, Sato T*. Decoding the basis of histological variation in human cancer.
Nature Rev Cancer. 2024;24:141-158.
PMID: 38135758
2023
Endo R, Sugimoto S, Shirosaki K, Kato H, Wada M, Kanai T, Sato T.
Clinical challenges of short bowel syndrome and the path forward for organoid-based regenerative medicine. Regen Ther. 2023 Jun 9;24:64-73.
PMID: 37868721
Hanyu H, Sugimoto S, Sato T.
Visualization of Differentiated Cells in 3D and 2D Intestinal Organoid Cultures. Methods Mol Biol. 2023;2650:141-153.
PMID: 37310630
Ebisudani T, Hamamoto J, Togasaki K, Mitsuishi A, Sugihara K, Shinozaki T, Fukushima T, Kawasaki K, Seino T, Oda M, Hanyu H, Toshimitsu K, Emoto K, Hayashi Y, Asakura K, Johnson TA, Terai H, Ikemura S, Kawada I, Ishii M, Hishida T, Asamura H, Soejima K, Nakagawa H, Fujii M, Fukunaga K, Yasuda H, Sato T.
Genotype-phenotype mapping of a patient-derived lung cancer organoid biobank identifies NKX2-1-defined Wnt dependency in lung adenocarcinoma. Cell Rep. 2023 Mar 28;42(3):112212. Epub 2023 Mar 6.
PMID: 36870059
※PhD Dissertation
2022
Sugimoto S, Kobayashi E, Kanai T, Sato T.
In Vivo Intestinal Research Using Organoid Transplantation. Keio J Med. 2022 Dec 25;71(4):73-81. Epub 2022 Dec 1.
PMID: 36450523
Oda M, Hatano Y, Sato T.
Intestinal epithelial organoids: regeneration and maintenance of the intestinal epithelium.
Curr Opin Genet Dev. 2022 Oct;76:101977. Epub 2022 Sep 1.
PMID: 36058061
Ishikawa K, Sugimoto S, Oda M, Fujii M, Takahashi S, Ohta Y, Takano A, Ishimaru K, Matano M, Yoshida K, Hanyu H, Toshimitsu K, Sawada K, Shimokawa M, Saito M, Kawasaki K, Ishii R, Taniguchi K, Imamura T, Kanai T, Sato T.
Identification of Quiescent LGR5+ Stem Cells in the Human Colon. Gastroenterology. 2022 Aug 10:S0016-5085(22)00912-X.
PMID: 35963362
View the press release
※PhD Dissertation
Toshimitsu K, Takano A, Fujii M, Togasaki K, Matano M, Takahashi S, Kanai T, Sato T.
Organoid screening reveals epigenetic vulnerabilities in human colorectal cancer. Nat Chem Biol. 2022 Mar 10.
PMID: 35273398
View the press release
※PhD Dissertation
Wakisaka Y, Sugimoto S, Sato T.
Organoid Medicine for Inflammatory Bowel Disease. Stem Cells. 2022 Mar 16;40(2):123-132.
PMID: 35258629
Ohta Y, Fujii M, Takahashi S, Takano A, Nanki K, Matano M, Hanyu H, Saito M, Shimokawa M, Nishikori S, Hatano Y, Ishii R, Sawada K, Machinaga A, Ikeda W, Imamura T, Sato T*
Cell-matrix interface regulates dormancy in human colon cancer stem cells.
Nature. 2022; 608:784-794.
PMID: 35798028
View the press release
※PhD Dissertation
2021
Sugimoto S, Iwao Y, Shimoda M, Takabayashi K, Sato T, Kanai T; Keio IBD Collaborators.
Epithelium Replacement Contributes to Field Expansion of Squamous Epithelium and Ulcerative Colitis-Associated Neoplasia. Gastroenterology. 2022 Jan;162(1):334-337.e5. doi: 10.1053/j.gastro.2021.09.051. Epub 2021 Sep 29.
PMID: 34597671
Sugimoto S, Sato T.
Organoid vs In Vivo Mouse Model: Which is Better Research Tool to Understand the Biologic Mechanisms of Intestinal Epithelium? Cell Mol Gastroenterol Hepatol. 2021 Oct 10; 2022;13(1):195-197.
PMID: 34644539
Ebisudani T, Sugimoto S, Haga K, Mitsuishi A, Takai-Todaka R, Fujii M, Toshimitsu K, Hamamoto J, Sugihara K, Hishida T, Asamura H, Fukunaga K, Yasuda H, Katayama K, Sato T.
Direct derivation of human alveolospheres for SARS-CoV-2 infection modeling and drug screening. Cell Rep. 2021 May 19;109218.
PMID: 34038715
View the press release
Sugimoto S, Kobayashi E*, Fujii M, Ohta Y, Arai K, Matano M, Ishikawa K, Miyamoto K, Toshimitsu K, Tkahashi S, Nanki K, Hakamata Y, Kanai T, Sato T*.
An organoid-based organ repurposing approach to treat short bowel syndrome.
Nature. 2021:99-104.
PMID: 33627870
View the press release
Fujii M*, Sato T*. Somatic cell-derived organoids as prototypes of human epithelial tissues and diseases.
Nature Materials. 2021:156-169
PMID: 32807924
2020
Sasaki N, Miyamoto K, Maslowski KM, Ohno H, Kanai T, Sato T.
Development of a Scalable Co-Culture System for Gut Anaerobes and Human Colon Epithelium. Gastroenterology. 2020 Mar 18;S0016-5085(20)30363-2.
PMID: 32199883
Kawasaki K, Fujii M, Sugimoto S, Ishikawa K, Matano M, Ohta Y, Toshimitsu K, Takahashi S, Hosoe N, Sekine S, Kanai T, Sato T.
Chromosome Engineering of Human Colon-Derived Organoids to Develop a Model of Traditional Serrated Adenoma. Gastroenterology. 2020 Feb;158(3):638-651.
PMID: 31622618
※PhD Dissertation
Togasaki K, Sugimoto S, Ohta Y, Nanki K, Matano M, Takahashi S, Fujii M, Kanai T, Sato T.
Wnt Signaling Shapes the Histological Variation in Diffuse Gastric Cancer. Gastroenterology. 2020 Nov 17;S0016-5085(20)35404-4.
PMID: 33217450
View the press release
Nanki K, Fujii M,Shimokawa M, Matano M, Nishikori S, Date S, Takano A, Toshimitsu K, Ohta Y, Takahashi S, Sugimoto S, Ishimaru K, Kawasaki K, Nagai Y, Ishii R, Yoshida K, Sasaki N, Hibi T, Ishihara S, Kanai T, Sato T*.
Somatic inflammatory gene mutations in human ulcerative colitis epithelium.
Nature. 2020;577:254-259.
PMID: 31853059
View the press release
Kawasaki K, Toshimitsu K, Matano M, Fujita M, Fujii M, Togasaki K, Ebisudani T, Shimokawa M, Takano A, Takahashi S, Ohta Y, Nanki K, Igarashi R, Ishimaru K, Ishida H, Sukawa Y, Sugimoto S, Saito Y, Maejima K, Sasagawa S, Lee H, Kim HG, Ha K, Hamamoto J, Fukunaga K, Maekawa A, Tanabe M, Ishihara S, Hamamoto Y, Yasuda H, Sekine S, Kudo A, Kitagawa Y, Kanai T, Nakagawa H, Sato T*.
An Organoid Biobank of Neuroendocrine Neoplasms Enables Genotype-Phenotype Mapping.
Cell. 2020;183 :1420-1435.
PMID: 33159857
View the press release
2019
Fujii M, Clevers H, Sato T.
Modeling Human Digestive Diseases With CRISPR-Cas9-Modified Organoids. Gastroenterology. 2019 Feb;156(3):562-576.
PMID: 30476497
Nakamoto N, Sasaki N, Aoki R, Miyamoto K, Suda W, Teratani T, Suzuki T, Koda Y, Chu PS, Taniki N, Yamaguchi A, Kanamori M, Kamada N, Hattori M, Ashida H, Sakamoto M, Atarashi K, Narushima S, Yoshimura A, Honda K, Sato T*, Kanai T*
Gut pathobionts underlie intestinal barrier dysfunction and liver T helper 17 cell immune response in primary sclerosing cholangitis.
Nature Microbiol. 2019:3:492-503.
PMID: 30643240
View the press release
2018
Fujii M, Matano M, Toshimitsu K, Takano A, Mikami Y, Nishikori S, Sugimoto S, Sato T*.
Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition.
Cell Stem Cell. 2018 ;23:787-793.
PMID: 30526881
View the press release
Nanki K, Toshimitsu K, Takano A, Fujii M, Shimokawa M, Ohta Y, Matano M, Seino T, Nishikori S, Ishikawa K, Kawasaki K, Togasaki K, Takahashi S, Sukawa Y, Ishida H, Sugimoto S, Kawakubo H, Kim J, Kitagawa Y, Sekine S, Koo BK, Kanai T, Sato T*.
Divergent Routes toward Wnt and R-spondin Niche Independency during Human Gastric Carcinogenesis.
Cell. 2018;174:856-869.
PMID: 30096312
View the press release
※博士学位論文
Seino T, Kawasaki S, Shimokawa M, Tamagawa H, Toshimitsu K, Fujii M, Ohta Y, Matano M, Nanki K, Kawasaki K, Takahashi S, Sugimoto S, Iwasaki E, Takagi J, Itoi T, Kitago M, Kitagawa Y, Kanai T, Sato T*.
Human Pancreatic Tumor Organoids Reveal Loss of Stem Cell Niche Factor Dependence during Disease Progression.
Cell Stem Cell. 2018 ;22:454-467.
PMID: 29337182
View the press release
※PhD Dissertation
Sugimoto S, Ohta Y, Fujii M, Matano M, Shimokawa M, Nanki K, Date S, Nishikori S, Nakazato Y, Nakamura N, Kanai T, Sato T*.
Reconstruction of the human colon epithelium in vivo.
Cell Stem Cell. 2018;22:454-467
PMID: 29290616
View the press release
※博士学位論文
2017
Shimokawa M, Ohta Y, Nishikori S, Matano M, Takano A, Fujii M, Date S, Sugimoto S, Kanai T, Sato T*.
Visualization and targeting of LGR5+ human colon cancer stem cells.
Nature 2017;545:187-192.
PMID: 28355176
View the press release
※博士学位論文
2016
Fujii M, Shimokawa M, Date S, Takano A, Matano M, Nanki K, Ohta Y, Toshimitsu K, Nakazato Y, Kawasaki K, Uraoka T, Watanabe T, Kanai T, Sato T.
A Colorectal Tumor Organoid Library Demonstrates Progressive Loss of Niche Factor requirements during Tumorigenesis. Cell Stem Cell. 2016 Jun 2;18(6):827-38.
PMID: 27212702
View the press release
※PhD Dissertation
2015
Fujii M, Matano M, Nanki K, Sato T.
Efficient enetic engineering of human intestinal organoids using electroporation. Nat Protoc. 2015 Oct;10(10):1474-85.
PMID: 26334867
Date S, Sato T* Mini-Gut Organoids: Reconstitution of the Stem Cell Niche.
Annu Rev Cell Dev Biol. 2015;31:269-89.
PMID: 26436704
Matano M, Date S, Shimokawa M, Takano A, Fujii M, Ohta Y, Watanabe T, Kanai T, Sato T*
Modeling colorectal cancer using CRISPR-Cas9-mediated engineering of human intestinal organoids.
Nature Medicine. 2015;21:256-62.
PMID: 25706875
2013
Sato T*, Clevers H*. Growing Self-organizing Mini-guts from a Single Intestinal Stem Cell: Mechanism and Applications.
Science. 2013; 340: 1190-4
PMID: 23744940