PUBLICATIONS

Selected Publications

Original Articles

Fukushima T, Togasaki K, Hamamoto J, Emoto K, Ebisudani T, Mitsuishi A, Sugihara K, Shinozaki T, Okada M, Saito A, Takaoka H, Ito F, Shigematsu L, Ohta Y, Takahashi S, Matano M, Kurebayashi Y, Ohgino K, Sato T, Kawada I, Asakura K, Hishida T, Asamura H, Ikemura S, Terai H, Soejima K, Oda M, Fujii M, Fukunaga K, Yasuda H*, Sato T*.
An organoid library unveils subtype-specific IGF-1 dependency via a YAP-AP1 axis in human small cell lung cancer.
Nature Cancer. 2025 in press.

PMID: 40307487

Igarashi R, Oda M, Okada R, Yano T, Takahashi S, Pastuhov S, Matano M, Masuda N, Togasaki K, Ohta Y, Sato S, Hishiki T, Suematsu M, Itoh M, Fujii M, Sato T*.
Generation of human adult hepatocyte organoids with metabolic functions.
Nature. 2025; 641: 1248–1257

PMID: 40240606

View the press release

※PhD Dissertation

Tamagawa H, Fujii M*, Togasaki K, Seino T, Kawasaki S, Takano A, Toshimitsu K, Takahashi S, Ohta Y, Matano M, Kawasaki K, Machida Y, Sekine S, Machinaga A, Sasai K, Kodama Y, Kakiuchi N, Ogawa S, Hirano T, Seno H, Kitago M, Kitagawa Y, Iwasaki E, Kanai T, Sato T*.
Wnt-deficient and hypoxic environment orchestrates squamous reprogramming of human pancreatic ductal adenocarcinoma.
Nature Cell Biol. 2024;26:1759-1772.

PMID: 39232216

View the press release

※PhD Dissertation

Sugimoto S, Kobayashi E*, Fujii M, Ohta Y, Arai K, Matano M, Ishikawa K, Miyamoto K, Toshimitsu K, Tkahashi S, Nanki K, Hakamata Y, Kanai T, Sato T*.
An organoid-based organ repurposing approach to treat short bowel syndrome.
Nature. 2021:99-104.

PMID: 33627870

View the press release

Ohta Y, Fujii M, Takahashi S, Takano A, Nanki K, Matano M, Hanyu H, Saito M, Shimokawa M, Nishikori S, Hatano Y, Ishii R, Sawada K, Machinaga A, Ikeda W, Imamura T, Sato T*
Cell-matrix interface regulates dormancy in human colon cancer stem cells.
Nature. 2022; 608:784-794.

PMID: 35798028

View the press release

※PhD Dissertation

Nanki K, Fujii M,Shimokawa M, Matano M, Nishikori S, Date S, Takano A, Toshimitsu K, Ohta Y, Takahashi S, Sugimoto S, Ishimaru K, Kawasaki K, Nagai Y, Ishii R, Yoshida K, Sasaki N, Hibi T, Ishihara S, Kanai T, Sato T*.
Somatic inflammatory gene mutations in human ulcerative colitis epithelium.
Nature. 2020;577:254-259.

PMID: 31853059

View the press release

Kawasaki K, Toshimitsu K, Matano M, Fujita M, Fujii M, Togasaki K, Ebisudani T, Shimokawa M, Takano A, Takahashi S, Ohta Y, Nanki K, Igarashi R, Ishimaru K, Ishida H, Sukawa Y, Sugimoto S, Saito Y, Maejima K, Sasagawa S, Lee H, Kim HG, Ha K, Hamamoto J, Fukunaga K, Maekawa A, Tanabe M, Ishihara S, Hamamoto Y, Yasuda H, Sekine S, Kudo A, Kitagawa Y, Kanai T, Nakagawa H, Sato T*.
An Organoid Biobank of Neuroendocrine Neoplasms Enables Genotype-Phenotype Mapping.
Cell. 2020;183 :1420-1435.

PMID: 33159857

View the press release

Nakamoto N, Sasaki N, Aoki R, Miyamoto K, Suda W, Teratani T, Suzuki T, Koda Y, Chu PS, Taniki N, Yamaguchi A, Kanamori M, Kamada N, Hattori M, Ashida H, Sakamoto M, Atarashi K, Narushima S, Yoshimura A, Honda K, Sato T*, Kanai T*
Gut pathobionts underlie intestinal barrier dysfunction and liver T helper 17 cell immune response in primary sclerosing cholangitis.
Nature Microbiol. 2019:3:492-503.

PMID: 30643240

View the press release

Fujii M, Matano M, Toshimitsu K, Takano A, Mikami Y, Nishikori S, Sugimoto S, Sato T*.
Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition.
Cell Stem Cell. 2018 ;23:787-793.

PMID: 30526881

View the press release

Nanki K, Toshimitsu K, Takano A, Fujii M, Shimokawa M, Ohta Y, Matano M, Seino T, Nishikori S, Ishikawa K, Kawasaki K, Togasaki K, Takahashi S, Sukawa Y, Ishida H, Sugimoto S, Kawakubo H, Kim J, Kitagawa Y, Sekine S, Koo BK, Kanai T, Sato T*.
Divergent Routes toward Wnt and R-spondin Niche Independency during Human Gastric Carcinogenesis.
Cell. 2018;174:856-869.

PMID: 30096312

View the press release

※博士学位論文

Seino T, Kawasaki S, Shimokawa M, Tamagawa H, Toshimitsu K, Fujii M, Ohta Y, Matano M, Nanki K, Kawasaki K, Takahashi S, Sugimoto S, Iwasaki E, Takagi J, Itoi T, Kitago M, Kitagawa Y, Kanai T, Sato T*.
Human Pancreatic Tumor Organoids Reveal Loss of Stem Cell Niche Factor Dependence during Disease Progression.
Cell Stem Cell. 2018 ;22:454-467.

PMID: 29337182

View the press release

※PhD Dissertation

Sugimoto S, Ohta Y, Fujii M, Matano M, Shimokawa M, Nanki K, Date S, Nishikori S, Nakazato Y, Nakamura N, Kanai T, Sato T*.
Reconstruction of the human colon epithelium in vivo.
Cell Stem Cell. 2018;22:454-467

PMID: 29290616

View the press release

※博士学位論文

Shimokawa M, Ohta Y, Nishikori S, Matano M, Takano A, Fujii M, Date S, Sugimoto S, Kanai T, Sato T*.
Visualization and targeting of LGR5+ human colon cancer stem cells.
Nature 2017;545:187-192.

PMID: 28355176

View the press release

※博士学位論文

Matano M, Date S, Shimokawa M, Takano A, Fujii M, Ohta Y, Watanabe T, Kanai T, Sato T*
Modeling colorectal cancer using CRISPR-Cas9-mediated engineering of human intestinal organoids.
Nature Medicine. 2015;21:256-62.

PMID: 25706875

Review Articles

Sato T*, Clevers H*. Growing Self-organizing Mini-guts from a Single Intestinal Stem Cell: Mechanism and Applications.
Science. 2013; 340: 1190-4

PMID: 23744940

Date S, Sato T* Mini-Gut Organoids: Reconstitution of the Stem Cell Niche.
Annu Rev Cell Dev Biol. 2015;31:269-89.

PMID: 26436704

Fujii M*, Sato T*. Somatic cell-derived organoids as prototypes of human epithelial tissues and diseases.
Nature Materials. 2021:156-169

PMID: 32807924

Fujii M*, Sekine S, Sato T*. Decoding the basis of histological variation in human cancer.
Nature Rev Cancer. 2024;24:141-158.

PMID: 38135758

Publications by Year

Selected Publications

2025

Fukushima T, Togasaki K, Hamamoto J, Emoto K, Ebisudani T, Mitsuishi A, Sugihara K, Shinozaki T, Okada M, Saito A, Takaoka H, Ito F, Shigematsu L, Ohta Y, Takahashi S, Matano M, Kurebayashi Y, Ohgino K, Sato T, Kawada I, Asakura K, Hishida T, Asamura H, Ikemura S, Terai H, Soejima K, Oda M, Fujii M, Fukunaga K, Yasuda H*, Sato T*.
An organoid library unveils subtype-specific IGF-1 dependency via a YAP-AP1 axis in human small cell lung cancer.
Nature Cancer. 2025 in press.

PMID: 40307487

Igarashi R, Oda M, Okada R, Yano T, Takahashi S, Pastuhov S, Matano M, Masuda N, Togasaki K, Ohta Y, Sato S, Hishiki T, Suematsu M, Itoh M, Fujii M, Sato T*.
Generation of human adult hepatocyte organoids with metabolic functions.
Nature. 2025; 641: 1248–1257

PMID: 40240606

View the press release

※PhD Dissertation

2024

Tamagawa H, Fujii M*, Togasaki K, Seino T, Kawasaki S, Takano A, Toshimitsu K, Takahashi S, Ohta Y, Matano M, Kawasaki K, Machida Y, Sekine S, Machinaga A, Sasai K, Kodama Y, Kakiuchi N, Ogawa S, Hirano T, Seno H, Kitago M, Kitagawa Y, Iwasaki E, Kanai T, Sato T*.
Wnt-deficient and hypoxic environment orchestrates squamous reprogramming of human pancreatic ductal adenocarcinoma.
Nature Cell Biol. 2024;26:1759-1772.

PMID: 39232216

View the press release

※PhD Dissertation

Fujii M*, Sekine S, Sato T*. Decoding the basis of histological variation in human cancer.
Nature Rev Cancer. 2024;24:141-158.

PMID: 38135758

2023

Endo R, Sugimoto S, Shirosaki K, Kato H, Wada M, Kanai T, Sato T.
Clinical challenges of short bowel syndrome and the path forward for organoid-based regenerative medicine. Regen Ther. 2023 Jun 9;24:64-73.

PMID: 37868721

Hanyu H, Sugimoto S, Sato T.
Visualization of Differentiated Cells in 3D and 2D Intestinal Organoid Cultures. Methods Mol Biol. 2023;2650:141-153.

PMID: 37310630

Ebisudani T, Hamamoto J, Togasaki K, Mitsuishi A, Sugihara K, Shinozaki T, Fukushima T, Kawasaki K, Seino T, Oda M, Hanyu H, Toshimitsu K, Emoto K, Hayashi Y, Asakura K, Johnson TA, Terai H, Ikemura S, Kawada I, Ishii M, Hishida T, Asamura H, Soejima K, Nakagawa H, Fujii M, Fukunaga K, Yasuda H, Sato T.
Genotype-phenotype mapping of a patient-derived lung cancer organoid biobank identifies NKX2-1-defined Wnt dependency in lung adenocarcinoma. Cell Rep. 2023 Mar 28;42(3):112212. Epub 2023 Mar 6.

PMID: 36870059

※PhD Dissertation

2022

Sugimoto S, Kobayashi E, Kanai T, Sato T.
In Vivo Intestinal Research Using Organoid Transplantation. Keio J Med. 2022 Dec 25;71(4):73-81. Epub 2022 Dec 1.

PMID: 36450523

Oda M, Hatano Y, Sato T.
Intestinal epithelial organoids: regeneration and maintenance of the intestinal epithelium.
Curr Opin Genet Dev. 2022 Oct;76:101977. Epub 2022 Sep 1.

PMID: 36058061

Ishikawa K, Sugimoto S, Oda M, Fujii M, Takahashi S, Ohta Y, Takano A, Ishimaru K, Matano M, Yoshida K, Hanyu H, Toshimitsu K, Sawada K, Shimokawa M, Saito M, Kawasaki K, Ishii R, Taniguchi K, Imamura T, Kanai T, Sato T.
Identification of Quiescent LGR5+ Stem Cells in the Human Colon. Gastroenterology. 2022 Aug 10:S0016-5085(22)00912-X.

PMID: 35963362

View the press release

※PhD Dissertation

Toshimitsu K, Takano A, Fujii M, Togasaki K, Matano M, Takahashi S, Kanai T, Sato T.
Organoid screening reveals epigenetic vulnerabilities in human colorectal cancer. Nat Chem Biol. 2022 Mar 10.

PMID: 35273398

View the press release

※PhD Dissertation

Wakisaka Y, Sugimoto S, Sato T.
Organoid Medicine for Inflammatory Bowel Disease. Stem Cells. 2022 Mar 16;40(2):123-132.

PMID: 35258629

Ohta Y, Fujii M, Takahashi S, Takano A, Nanki K, Matano M, Hanyu H, Saito M, Shimokawa M, Nishikori S, Hatano Y, Ishii R, Sawada K, Machinaga A, Ikeda W, Imamura T, Sato T*
Cell-matrix interface regulates dormancy in human colon cancer stem cells.
Nature. 2022; 608:784-794.

PMID: 35798028

View the press release

※PhD Dissertation

2021

Sugimoto S, Iwao Y, Shimoda M, Takabayashi K, Sato T, Kanai T; Keio IBD Collaborators.
Epithelium Replacement Contributes to Field Expansion of Squamous Epithelium and Ulcerative Colitis-Associated Neoplasia. Gastroenterology. 2022 Jan;162(1):334-337.e5. doi: 10.1053/j.gastro.2021.09.051. Epub 2021 Sep 29.

PMID: 34597671

Sugimoto S, Sato T.
Organoid vs In Vivo Mouse Model: Which is Better Research Tool to Understand the Biologic Mechanisms of Intestinal Epithelium? Cell Mol Gastroenterol Hepatol. 2021 Oct 10; 2022;13(1):195-197.

PMID: 34644539

Ebisudani T, Sugimoto S, Haga K, Mitsuishi A, Takai-Todaka R, Fujii M, Toshimitsu K, Hamamoto J, Sugihara K, Hishida T, Asamura H, Fukunaga K, Yasuda H, Katayama K, Sato T.
Direct derivation of human alveolospheres for SARS-CoV-2 infection modeling and drug screening. Cell Rep. 2021 May 19;109218.

PMID: 34038715

View the press release

Sugimoto S, Kobayashi E*, Fujii M, Ohta Y, Arai K, Matano M, Ishikawa K, Miyamoto K, Toshimitsu K, Tkahashi S, Nanki K, Hakamata Y, Kanai T, Sato T*.
An organoid-based organ repurposing approach to treat short bowel syndrome.
Nature. 2021:99-104.

PMID: 33627870

View the press release

Fujii M*, Sato T*. Somatic cell-derived organoids as prototypes of human epithelial tissues and diseases.
Nature Materials. 2021:156-169

PMID: 32807924

2020

Sasaki N, Miyamoto K, Maslowski KM, Ohno H, Kanai T, Sato T.
Development of a Scalable Co-Culture System for Gut Anaerobes and Human Colon Epithelium. Gastroenterology. 2020 Mar 18;S0016-5085(20)30363-2.

PMID: 32199883

Kawasaki K, Fujii M, Sugimoto S, Ishikawa K, Matano M, Ohta Y, Toshimitsu K, Takahashi S, Hosoe N, Sekine S, Kanai T, Sato T.
Chromosome Engineering of Human Colon-Derived Organoids to Develop a Model of Traditional Serrated Adenoma. Gastroenterology. 2020 Feb;158(3):638-651.

PMID: 31622618

※PhD Dissertation

Togasaki K, Sugimoto S, Ohta Y, Nanki K, Matano M, Takahashi S, Fujii M, Kanai T, Sato T.
Wnt Signaling Shapes the Histological Variation in Diffuse Gastric Cancer. Gastroenterology. 2020 Nov 17;S0016-5085(20)35404-4.

PMID: 33217450

View the press release

Nanki K, Fujii M,Shimokawa M, Matano M, Nishikori S, Date S, Takano A, Toshimitsu K, Ohta Y, Takahashi S, Sugimoto S, Ishimaru K, Kawasaki K, Nagai Y, Ishii R, Yoshida K, Sasaki N, Hibi T, Ishihara S, Kanai T, Sato T*.
Somatic inflammatory gene mutations in human ulcerative colitis epithelium.
Nature. 2020;577:254-259.

PMID: 31853059

View the press release

Kawasaki K, Toshimitsu K, Matano M, Fujita M, Fujii M, Togasaki K, Ebisudani T, Shimokawa M, Takano A, Takahashi S, Ohta Y, Nanki K, Igarashi R, Ishimaru K, Ishida H, Sukawa Y, Sugimoto S, Saito Y, Maejima K, Sasagawa S, Lee H, Kim HG, Ha K, Hamamoto J, Fukunaga K, Maekawa A, Tanabe M, Ishihara S, Hamamoto Y, Yasuda H, Sekine S, Kudo A, Kitagawa Y, Kanai T, Nakagawa H, Sato T*.
An Organoid Biobank of Neuroendocrine Neoplasms Enables Genotype-Phenotype Mapping.
Cell. 2020;183 :1420-1435.

PMID: 33159857

View the press release

2019

Fujii M, Clevers H, Sato T.
Modeling Human Digestive Diseases With CRISPR-Cas9-Modified Organoids. Gastroenterology. 2019 Feb;156(3):562-576.

PMID: 30476497

Nakamoto N, Sasaki N, Aoki R, Miyamoto K, Suda W, Teratani T, Suzuki T, Koda Y, Chu PS, Taniki N, Yamaguchi A, Kanamori M, Kamada N, Hattori M, Ashida H, Sakamoto M, Atarashi K, Narushima S, Yoshimura A, Honda K, Sato T*, Kanai T*
Gut pathobionts underlie intestinal barrier dysfunction and liver T helper 17 cell immune response in primary sclerosing cholangitis.
Nature Microbiol. 2019:3:492-503.

PMID: 30643240

View the press release

2018

Fujii M, Matano M, Toshimitsu K, Takano A, Mikami Y, Nishikori S, Sugimoto S, Sato T*.
Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition.
Cell Stem Cell. 2018 ;23:787-793.

PMID: 30526881

View the press release

Nanki K, Toshimitsu K, Takano A, Fujii M, Shimokawa M, Ohta Y, Matano M, Seino T, Nishikori S, Ishikawa K, Kawasaki K, Togasaki K, Takahashi S, Sukawa Y, Ishida H, Sugimoto S, Kawakubo H, Kim J, Kitagawa Y, Sekine S, Koo BK, Kanai T, Sato T*.
Divergent Routes toward Wnt and R-spondin Niche Independency during Human Gastric Carcinogenesis.
Cell. 2018;174:856-869.

PMID: 30096312

View the press release

※博士学位論文

Seino T, Kawasaki S, Shimokawa M, Tamagawa H, Toshimitsu K, Fujii M, Ohta Y, Matano M, Nanki K, Kawasaki K, Takahashi S, Sugimoto S, Iwasaki E, Takagi J, Itoi T, Kitago M, Kitagawa Y, Kanai T, Sato T*.
Human Pancreatic Tumor Organoids Reveal Loss of Stem Cell Niche Factor Dependence during Disease Progression.
Cell Stem Cell. 2018 ;22:454-467.

PMID: 29337182

View the press release

※PhD Dissertation

Sugimoto S, Ohta Y, Fujii M, Matano M, Shimokawa M, Nanki K, Date S, Nishikori S, Nakazato Y, Nakamura N, Kanai T, Sato T*.
Reconstruction of the human colon epithelium in vivo.
Cell Stem Cell. 2018;22:454-467

PMID: 29290616

View the press release

※博士学位論文

2017

Shimokawa M, Ohta Y, Nishikori S, Matano M, Takano A, Fujii M, Date S, Sugimoto S, Kanai T, Sato T*.
Visualization and targeting of LGR5+ human colon cancer stem cells.
Nature 2017;545:187-192.

PMID: 28355176

View the press release

※博士学位論文

2016

Fujii M, Shimokawa M, Date S, Takano A, Matano M, Nanki K, Ohta Y, Toshimitsu K, Nakazato Y, Kawasaki K, Uraoka T, Watanabe T, Kanai T, Sato T.
A Colorectal Tumor Organoid Library Demonstrates Progressive Loss of Niche Factor requirements during Tumorigenesis. Cell Stem Cell. 2016 Jun 2;18(6):827-38.

PMID: 27212702

View the press release

※PhD Dissertation

2015

Fujii M, Matano M, Nanki K, Sato T.
Efficient enetic engineering of human intestinal organoids using electroporation. Nat Protoc. 2015 Oct;10(10):1474-85.

PMID: 26334867

Date S, Sato T* Mini-Gut Organoids: Reconstitution of the Stem Cell Niche.
Annu Rev Cell Dev Biol. 2015;31:269-89.

PMID: 26436704

Matano M, Date S, Shimokawa M, Takano A, Fujii M, Ohta Y, Watanabe T, Kanai T, Sato T*
Modeling colorectal cancer using CRISPR-Cas9-mediated engineering of human intestinal organoids.
Nature Medicine. 2015;21:256-62.

PMID: 25706875

2013

Sato T*, Clevers H*. Growing Self-organizing Mini-guts from a Single Intestinal Stem Cell: Mechanism and Applications.
Science. 2013; 340: 1190-4

PMID: 23744940